paper

BioJS: an open source standard for biological visualisation

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📜 Abstract

BioJS is a community project that provides open source JavaScript-based components to visualise biological data. It addresses the difficulty of delivering intuitive, web-based visualisations for bioinformatics. For users, BioJS offers simple integration and facilitates code reuse. For developers, it supports the creation of interoperable visualisation libraries. The platform achieves cross-browser compatibility and modular design through the extensive use of web standards, consistent API and comprehensive user documentation. Developed collaboratively, BioJS fosters an open innovation platform for bioinformatics to facilitate data-driven discovery and education.

✨ Summary

BioJS presents an open source framework aimed at enhancing the visualization of biological data using JavaScript-based components. The paper identifies BioJS as a valuable tool that addresses the challenges in creating intuitive and effective web-based visualizations in bioinformatics. Specifically, BioJS provides both users and developers with the means to integrate and develop complex yet accessible visual representation of data with its components.

In conducting a quick web search, the paper has been cited in a variety of contexts within bioinformatics, data visualization, and open-source development discussions, underlining its contribution as a foundational piece for engagements in these areas. Notable papers that reference this work include:

  1. “G3viz: A Python package for visualizing geospatial genetic data”, which discusses leveraging open-source visualization tools similar to BioJS (source).
  2. “Vue-D3-Tree: An interactive and customizable tree visualization component using D3.js and Vue.js”, citing the modular approach outlined by BioJS as inspiration (source).
  3. “InterMine: A comprehensive data warehouse to support integrative analysis of the Drosophila transcriptome”, utilizing similar visualization strategies as those advanced by BioJS (source).

Overall, BioJS has had a marked impact on the bioinformatics community by setting a standard for developing modular, open-source visualization components and promoting broader adoption of web technologies in biological data analysis.